Compare preprocessing for pixel clustering - all samples, Gaussian blur using sigma=4
Candace Liu
April 3, 2020
ln transformation, 99.9% normalization
Log2 transformation, 99.9% normalization
Log10 transformation, 99.9% normalization
Arcsinh transformation, 99.9% normalization
Binarize, cut-off = 50th percentile of all non-zero pixels for each marker
Binarize, cut-off = 80th percentile of all non-zero pixels for each marker